species:   Clros
pid:       PID2217
parent:    cro-mir-7
paralog:   
locus:     CADEHS020000012.2:1157823-1157879
matures:   ['GCCGAUUAGUAGUUGGGUCGG', 'AUCCCGUCUGCUCUCCGCAC']
srr:       ERR5950930
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950930.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950930.cram CADEHS020000012.2:1157823-1157879

1103 out of bounds
201 alignments
200 proper strand
197 stranded perfect matches

********************              ***********************
AUCCCGUCUGCUCUCCGCACGUUAAGCUAGUAAGGGGCCGAUUAGUAGUUGGGUCGG
..((((.(((((.((.((.(.(((......))).).)).))..))))).))))....
------------------------------------GCCGAUUAGUAGUUGGGUCGG l=21 a=110 c
AUCCCGUCUGCUCUCCGCAC------------------------------------- l=20 a=0 c*
------------------------------------GCCGAUUAGUAGUUGGGUCGG l=21 a=110 ma
AUCCCGUCUGCUCUCCGCAC------------------------------------- l=20 a=0 ma*

----------CUCUCCGCACGUUAAG------------------------------- l=16 a=1 
----------CUCUCCGCACGUUAAGCUAGUAAGGGGCC------------------ l=29 a=1 
----------CUCUCCGCACGUUAAGCUAGUAAGGGGCCGAUUAGUAGUUGGGU--- l=44 a=1 
--------------CCGCACGUUAAGCUAG--------------------------- l=16 a=1 
--------------CCGCACGUUAAGCUAGUAAGGGGCCGAU--------------- l=28 a=1 
---------------CGCACGUUAAGCUAGUAAGGGG-------------------- l=22 a=1 
-------------------CGUUAAGCUAGUAAGGGGCCGAUUAGUAGUUGGGUCG- l=37 a=1 
--------------------uUUAAGCUAGUAAGGGGCCG----------------- l=20 a=1 
--------------------GUUAAGCUAGUAAGGGGCCGAUUAGUAGUUGGGU--- l=34 a=1 
-----------------------AAGCUAGUAAGGGGCCG----------------- l=17 a=1 
-------------------------GCUAGUAAGGGGCC------------------ l=14 a=1 
--------------------------CUAGUAAGGGGCCGAUUAGUAGUUGGGUCG- l=30 a=1 
----------------------------AGUAAGGGGCCGAUU-------------- l=15 a=2 
------------------------------UAAGGGGCCGAUUAGUAGUU------- l=20 a=3 
------------------------------UAAGGGGCCGAUUAGUAGUUGGGUC-- l=25 a=2 
----------------------------------GGGCCGAUUAGUAGUUGGGU--- l=20 a=1 
----------------------------------GGGCCGAUUAGUAGUUGGGUCGG l=23 a=1 
-----------------------------------GGCCGAUUAGUAGUUGGGU--- l=19 a=2 
-----------------------------------GGCCGAUUAGUAGUUGGGUC-- l=20 a=3 
-----------------------------------GGCCGAUUAGUAGUUGGGUCGG l=22 a=19 
-----------------------------------GGCCGAUUAGUAGUUGGGUCGc l=22 a=1 
-----------------------------------GGCCGAUUAGUAGUUGGGaCGG l=22 a=1 
------------------------------------GCCGAUUAGUAGUUG------ l=15 a=1 
------------------------------------GCCGAUUAGUAGUUGG----- l=16 a=1 
------------------------------------GCCGAUUAGUAGUUGGG---- l=17 a=9 
------------------------------------GCCGAUUAGUAGUUGGGU--- l=18 a=5 
------------------------------------GCCGAUUAGUAGUUGGGUC-- l=19 a=11 
------------------------------------GCCGAUUAGUAGUUGGGUCG- l=20 a=2 
------------------------------------GCCGAUUAGUAGUUGGGUCGG l=21 a=110 (c,ma)
-------------------------------------CCGAUUAGUAGUUGGG---- l=16 a=1 
-------------------------------------CCGAUUAGUAGUUGGGU--- l=17 a=3 
-------------------------------------CCGAUUAGUAGUUGGGUC-- l=18 a=2 
-------------------------------------CCGAUUAGUAGUUGGGUCG- l=19 a=2 
-------------------------------------CCGAUUAGUAGUUGGGUCGG l=20 a=3 
--------------------------------------CGAUUAGUAGUUGGGUC-- l=17 a=1 
---------------------------------------GAUUAGUAGUUGGGU--- l=15 a=1 
-----------------------------------------UUAGUAGUUGGGU--- l=13 a=1 

mb-01011
ax-1001011
ku-11
ss-101111101110
fn-111
